Publications

Forestry – including afforestation (the planting of trees on land where they have not recently existed), reforestation, avoided deforestation, and forest management – can lead to increased sequestration of atmospheric carbon dioxide and has therefore been proposed as a strategy to mitigate climate change. However, forestry also influences land-surface properties, including albedo (the fraction of incident sunlight reflected back to space), surface roughness, and evapotranspiration, all of which affect the amount and forms of energy transfer to the atmosphere. In some circumstances, these biophysical feedbacks can result in local climate warming, thereby counteracting the effects of carbon sequestration on global mean temperature and reducing or eliminating the net value of climate-change mitigation projects. Here, we review published and emerging research that suggests ways in which forestry projects can counteract the consequences associated with biophysical interactions, and highlight knowledge gaps in managing forests for climate protection. We also outline several ways in which biophysical effects can be incorporated into frameworks that use the maintenance of forests as a climate protection strategy.

Understanding how elevated atmospheric CO₂ alters the formation and decomposition of soil organic carbon (SOC) is important but challenging. If elevated CO₂ induces even small changes in rates of formation or decay of SOC, there could be substantial feedbacks on the atmosphere's concentration of CO₂. However, the long turnover times of many SOC pools – decades to centuries – make the detection of changes in the soil's pool size difficult. Long-term CO₂ enrichment experiments have offered unprecedented opportunities to explore these issues in intact ecosystems for more than a decade. Increased NPP with elevated CO₂ has prompted the hypothesis that SOC may increase at the same time that increased vegetation nitrogen (N) uptake and accumulation indicates probable declines in SON. Varying investigators thus have hypothesized that SOC will increase and SON will decline to explain increased NPP with elevated CO₂; researchers also invoke biogeochemical theory and stoichiometric constraints to argue for strong limitations on the co-occurrence of these phenomena. We call for researchers to investigate two broad research questions to elucidate the drivers of these processes. First, we ask how elevated CO₂ influences compound structure and stoichiometry of that proportion of NPP retained by soil profiles for relatively long time periods. We also call for investigations of the mechanisms underlying the decomposition of mineralizable organic matter with elevated CO₂. Specifically, we need to understand how elevated CO₂ influences microbial priming (driven by enhanced microbial energy needs associated with increases in biomass or activity) and microbial mining of N (driven by enhanced microbial N demand associated with greater vegetative N uptake), two processes that necessarily will be constrained by the stoichiometry of both substrates and microbial demands. Applying technologies such as nuclear magnetic resonance and the detection of biomarkers that reveal organic matter structure and origins, and studying microbial stoichiometric constraints, will dramatically improve our ability to predict future patterns of ecosystem C and N cycling.

We determined the response of terrestrial methane (CH₄) uptake to 4 years of full-factorial manipulations of precipitation and temperature in four ecosystems along a 50 km warm and dry to cold and wet climatic gradient (desert grassland, pinyon-juniper woodland, ponderosa pine forest, and mixed conifer forest). Our goals were to determine whether ecosystem-specific, intraannual, and interactive responses to altered precipitation and warming are quantitatively important. Passive collectors and interceptors increased (+50% per event) and reduced (−30% per event) the quantity of precipitation delivered to experimental plant–soil mesocosms, and downward transfer along the elevation gradient warmed mesocosms by 1.8°C on average. Methane uptake in the colder and wetter ecosystems along the gradient decreased with increasing precipitation, especially during the wet season. The warmer and drier ecosystems, however, responded more strongly to warming, exhibiting less CH₄ uptake with increasing temperature. We found no interaction between altered precipitation and warming in any ecosystem. Soil CH₄ consumption in the laboratory was a strong predictor of ecosystem differences in field CH₄ consumption, but was a poor predictor of the effects of climatic change observed in the field. Based on our results, future climate scenarios that are wet and warm will cause the largest reduction in terrestrial CH₄ uptake across ecosystem types.

<span class="paraNumber">[1]</span> The future size of the terrestrial methane (CH₄) sink of upland soils remains uncertain, along with potential feedbacks to global warming. Much of the uncertainty lies in our lack of knowledge about potential interactive effects of multiple simultaneous global environmental changes. Field CH₄ fluxes and laboratory soil CH₄ consumption were measured five times during 3 consecutive years in a California annual grassland exposed to 8 years of the full factorial combination of ambient and elevated levels of precipitation, temperature, atmospheric CO₂ concentration, and N deposition. Across all sampling dates and treatments, increased precipitation caused a 61% reduction in field CH₄ uptake. However, this reduction depended quantitatively on other global change factors. Higher precipitation reduced CH₄ uptake when temperature or N deposition (but not both) increased, and under elevated CO₂ but only late in the growing season. Warming alone also decreased CH₄ uptake early in the growing season, which was partly explained by a decrease in laboratory soil CH₄ consumption. Atmospheric CH₄ models likely need to incorporate nonadditive interactions, seasonal interactions, and interactions between methanotrophy and methanogenesis. Despite the complexity of interactions we observed in this multifactor experiment, the outcome agrees with results from single-factor experiments: an increased terrestrial CH₄ sink appears less likely than a reduced one.

The boreal region stores a large proportion of the world's terrestrial carbon (C) and is subject to high-intensity, stand-replacing wildfires that release C and nitrogen (N) stored in biomass and soils through combustion. While severity and extent of fires drives overall emissions, methods for accurately estimating fire severity are poorly tested in this unique region where organic soil combustion is responsible for a large proportion of total emissions. We tested a method using adventitious roots on black spruce trees (<span class="genusSpeciesInfoAsset">Picea mariana</span>) in combination with canopy allometry to reconstruct prefire organic soil layers and canopy biomass in boreal black spruce forests of Alaska (USA), thus providing a basis for more accurately quantifying fire severity levels. We calibrated this adventitious-root-height method in unburned spruce stands and then tested it by comparing our biomass and soils estimates reconstructed in burned stands with actual prefire stand measurements. We applied this approach to 38 black spruce stands burned in 2004 in Alaska, where we measured organic soil and stand characteristics and estimated the amount of soil and canopy biomass, as well as C and N pools, consumed by fire. These high-intensity quantitative estimates of severity were significantly correlated to a semiquantitative visual rapid assessment tool, the composite burn index (CBI). This index has proved useful for assessing fire severity in forests in the western United States but has not yet been widely tested in the boreal forest. From our study, we conclude that using postfire measurements of adventitious roots on black spruce trees in combination with soils and tree data can be used to reconstruct prefire organic soil depths and biomass pools, providing accurate estimates of fire severity and emissions. Furthermore, using our quantitative reconstruction we show that CBI is a reasonably good predictor of biomass and soil C loss at these sites, and it shows promise for rapidly estimating fire severity across a wide range of boreal black spruce forest types, especially where the use of high-intensity measurements may be limited by cost and time.

The microbial communities of high-latitude ecosystems are expected to experience rapid changes over the next century due to climate warming and increased deposition of reactive nitrogen, changes that will likely affect microbial community structure and function. In moist acidic tundra (MAT) soils on the North Slope of the Brooks Range, Alaska, substantial losses of C and N were previously observed after long-term nutrient additions. To analyse the role of microbial communities in these losses, we utilized 16S rRNA gene tag pyrosequencing coupled with community-level physiological profiling to describe changes in MAT bacterial communities after short- and long-term nutrient fertilization in four sets of paired control and fertilized MAT soil samples. Bacterial diversity was lower in long-term fertilized plots. The <em>Acidobacteria</em> were one of the most abundant phyla in all soils and distinct differences were noted in the distributions of<em>Acidobacteria</em> subgroups between mineral and organic soil layers that were also affected by fertilization. In addition, <em>Alpha</em>- and <em>Gammaproteobacteria</em> were more abundant in long-term fertilized samples compared with control soils. The dramatic increase in sequences within the <em>Gammaproteobacteria</em> identified as <em>Dyella</em> spp. (order<em>Xanthomonadales</em>) in the long-term fertilized samples was confirmed by quantitative PCR (qPCR) in several samples. Long-term fertilization was also correlated with shifts in the utilization of specific substrates by microbes present in the soils. The combined data indicate that long-term fertilization resulted in a significant change in microbial community structure and function linked to changes in carbon and nitrogen availability and shifts in above-ground plant communities.

Disturbances alter ecosystem carbon dynamics, often by reducing carbon uptake and stocks. We compared the impact of two types of disturbances that represent the most likely future conditions of currently dense ponderosa pine forests of the southwestern United States: (1) high-intensity fire and (2) thinning, designed to reduce fire intensity. High-severity fire had a larger impact on ecosystem carbon uptake and storage than thinning. Total ecosystem carbon was 42% lower at the intensely burned site, 10 years after burning, than at the undisturbed site. Eddy covariance measurements over two years showed that the burned site was a net annual source of carbon to the atmosphere whereas the undisturbed site was a sink. Net primary production (NPP), evapotranspiration (ET), and water use efficiency were lower at the burned site than at the undisturbed site. In contrast, thinning decreased total ecosystem carbon by 18%, and changed the site from a carbon sink to a source in the first post-treatment year. Thinning also decreased ET, reduced the limitation of drought on carbon uptake during summer, and did not change water use efficiency. Both disturbances reduced ecosystem carbon uptake by decreasing gross primary production (55% by burning, 30% by thinning) more than total ecosystem respiration (TER; 33–47% by burning, 18% by thinning), and increased the contribution of soil carbon dioxide efflux to TER. The relationship between TER and temperature was not affected by either disturbance. Efforts to accurately estimate regional carbon budgets should consider impacts on carbon dynamics of both large disturbances, such as high-intensity fire, and the partial disturbance of thinning that is often used to prevent intense burning. Our results show that thinned forests of ponderosa pine in the southwestern United States are a desirable alternative to intensively burned forests to maintain carbon stocks and primary production.

The linkages between fluvial geomorphology and aquatic ecosystems are commonly conceptualized as a one-way causal chain inwhich geomorphic processes create the physical template for ecological dynamics. In streams with a travertine step-pool morphology, however, biotic processes strongly influence the formation and growth of travertinedams, creating the potential fornumerous feedbacks.Herewetakeadvantage of the decommissioning of a hydroelectricproject on Fossil Creek,Arizona,where restoration of CaCO3-rich baseflowhas triggered rapid regrowth of travertine dams, to explore the interactions between biotic and abiotic factors in travertine morphodynamics. We consider three conceptual frameworks, where biotic factors independently modulate the rate of physical and chemical processes that produce travertine dams; combinewith abiotic factors in a set of feedback loops; handwork in opposition to abiotic processes, such that the travertine step-pool morphology reflects a dynamic balance between dominantly-biotic constructive processes and dominantly-abiotic destructive processes. We consider separately three phases of an idealized life cycle of travertine dams: dam formation, growth, and destruction by erosive floods. Dam formation is catalyzed by abiotic factors (e.g. channel constrictions, and bedrock steps) and biotic factors (e.g. woody debris, and emergent vegetation). From measurements of changes over time in travertine thickness on a bedrock step, we find evidence for a positive feedback between flow hydraulics and travertine accrual. Measurements of organic content in travertine samples from this step show that algal growth contributes substantially to travertine accumulation and suggest that growth is most rapid during seasonal algal blooms. To document vertical growth of travertine dams, we embedded 252 magnets into nascent travertine dams, along a 10 km stretch of river. Growth rates are calculated from changes over time in themagnetic field intensity at the dam surface. At each magnet we record a range of hydraulic and travertine composition variables to characterize the dominant mechanism of growth: abiotic precipitation, algal growth, trapping of organic material, or in situ plant growth.We find: (1) rapid growth of travertine damsfollowingflowrestoration, averagingmore than 2 cm/year; (2) growth rates decline downstream, consistent with loss of dissolved constituents because of upstream travertine deposition, but also parallel to a decline in organic content in dam surface material and a downstream shift in dominant biotic mechanism; (3) biotic mechanisms are associated with faster growth rates; and (4) correlations between hydraulic attributes and growth rates are more consistent with biotic than abiotic controls.We conclude that the strong influence of living organisms on rates of travertine growth, coupled with the beneficial effects of travertine on ecosystem dynamics, demonstrate a positive feedback between biology and geomorphology. During our two-year study period, erosive flood flows occurred causing widespread removal of travertine. The temporal distribution of travertine growth and erosion over the study period is consistent with a bimodal magnitude– frequency relation in which growth dominates except when large, infrequent storms occur. This model may be useful in other systems where biology exerts strong controls on geomorphic processes.

The resilience and vulnerability of permafrost to climate change depends on complex interactions among topography, water, soil, vegetation, and snow, which allow permafrost to persist at mean annual air temperatures (MAATs) as high as +2 °C and degrade at MAATs as low as –20 °C. To assess these interactions, we compiled existing data and tested effects of varying conditions on mean annual surface temperatures (MASTs) and 2 m deep temperatures (MADTs) through modeling. Surface water had the largest effect, with water sediment temperatures being ~10 °C above MAAT. A 50% reduction in snow depth reduces MADT by 2 °C. Elevation changes between 200 and 800 m increases MAAT by up to 2.3 °C and snow depths by ~40%. Aspect caused only a ~1 °C difference in MAST. Covarying vegetation structure, organic matter thickness, soil moisture, and snow depth of terrestrial ecosystems, ranging from barren silt to white spruce (Picea glauca(Moench) Voss) forest to tussock shrub, affect MASTs by ~6 °C and MADTs by ~7 °C. Groundwater at 2–7 °C greatly affects lateral and internal permafrost thawing. Analyses show that vegetation succession provides strong negative feedbacks that make permafrost resilient to even large increases in air temperatures. Surface water, which is affected by topography and ground ice, provides even stronger negative feedbacks that make permafrost vulnerable to thawing even under cold temperatures.

Research on permafrost carbon has dramatically increased in the past few years, A new estimate of 1672 Pg C of belowground organic carbon in the northern circumpolar permafrost region more than doubles the previous value and highlights the potential role of permafrost carbon in the Earth S ystem. Uncertainties in this new estimate remain due to relatively few available pedon data for certain geographic sectors and the deeper cryoturbated soil horizons, and the large polygon size in the soil maps used for upscaling. The large permafrost carbon pool is not equally distributed across the landscape: peat deposits, cryoturbated soils and the loess-like deposits of the yedoma complex contain disproportionately large amounts of soil organic matteL often exhibiting a low degree of decomposition. Recent findings in Alaska and northern S weden provide strong evidence that the deeper soil carbon in permafrost terrain is starting to be released, supporting previous reports from S iberia. The permafrost carbon pool is not yet fully integrated in climate and ecosystem models and an important objective should be to define typical pedons appropriate for model setups. The thawing permafrost carbon feedback needs to be included in model projections of future climate change.

Permafrost soils store nearly half of global soil carbon (C), and therefore permafrost thawing could lead to large amounts of greenhouse gas emissions via decomposition of soil organic matter. When ice-rich permafrost thaws, it creates a localized surface subsidence called thermokarst terrain, which changes the soil microenvironment. We used soil profile CO₂ measurements to understand the response of belowground C emissions for different soil depths from upland tundra as a result of permafrost thaw and thermokarst development. We established sites in central Alaska, where permafrost thaw and thermokarst development had been monitored for the past 2 decades. Cumulative growing season CO₂ production averaged for 3 years (2005–2007) ranged from 177 to 270 g CO₂-C m⁻² and was lowest in the least disturbed moist acidic tundra and highest where thawing of permafrost and thermokarst was most pronounced. We were able to explain 55% of variability in growing season soil CO₂production using surface subsidence, soil temperature, and site differences. This was likely a direct effect of permafrost thaw and thermokarst development and an indirect effect of changes in microsite soil temperature and surface moisture content, which stimulated soil organic matter decomposition and root respiration. We also observed unusually high CO₂ concentrations in the early growing season, which may be attributable to trapped CO₂ within air pockets in the frozen soil. Taken together, these results supported the projection that permafrost thaw and thermokarst development will increase belowground carbon emissions in the upland tundra.

<div class="page" title="Page 1"> <div class="section"> <div class="layoutArea"> <div class="column"> Flow diversion and invasive species are two major threats to freshwater ecosystems, threats that restoration efforts attempt to redress. Yet, few restoration projects monitor whether removal of these threats improve target charac- teristics of the ecosystem. Fewer still have an appropriate experimental design from which causal inferences can be drawn as to the relative merits of removing exotic fish, restoring flow, or both. We used a dam decommissioning in Fossil Creek, Arizona, to compare responses of native fish to exotic fish removal and flow restoration, using a before- after-control-impact design with three impact treatments: flow restoration alone where exotics had not been present, flow restoration and exotic fish removal, and flow restora- tion where exotics remain and a control reach that was unaffected by restoration actions. We show that removal of exotic fish dramatically increased native fish abundance. <div class="page" title="Page 1"> <div class="section"> <div class="layoutArea"> <div class="column"> Flow restoration also increased native fish abundance, but the effect was smaller than that from removing exotics. Flow restoration had no effect where exotic fish remained, although it may have had other benefits to the ecosystem. The cost to restore flow ($12 million) was considerably higher than that to eradicate exotics ($1.1 million). The long-term influence of flow restoration could increase, as travertine dams grow and re-shape the creek increasing habitat for native fish. But in the 2-year period consid- ered here, the return on investment for extirpating exotics far exceeded that from flow restoration. Projects aimed to restore native fish by restoring flow should also consider the additional investment required to eradicate exotic fish. </div> </div> </div> </div> </div> </div> </div> </div>

The northern cryosphere is undergoing substantial warming of permafrost and loss of sea ice. Release of stored carbon to the atmosphere in response to this change has the potential to affect the global climate system. Studies indicate that the northern cryosphere has been not only a substantial sink for atmospheric CO₂ in recent decades, but also an important source of CH₄ because of emissions from wetlands and lakes. Analyses suggest that the sensitivity of the carbon cycle of the region over the 21st Century is potentially large, but highly uncertain because numerous pathways of response will be affected by warming. Further research should focus on sensitive elements of the carbon cycle such as the consequences of increased fire disturbance, permafrost degradation, and sea ice loss in the northern cryosphere region.

Despite increasing interest in the effects of climate change on soil processes, the response of nitrification to elevated CO₂remains unclear. Responses may depend on soil nitrogen (N) status, and inferences may vary depending on the methodological approach used. We investigated the interactive effects of elevated CO₂ and inorganic N supply on gross nitrification (using ¹⁵N pool dilution) and potential nitrification (using nitrifying enzyme activity assays) in <em class="EmphasisTypeItalic ">Dactylis glomerata</em> mesocosms. We measured the responses of putative drivers of nitrification (NH<span class="Stack">₄⁺</span> production, NH<span class="Stack">₄⁺</span> consumption, and soil environmental conditions) and of potential denitrification, a process functionally linked to nitrification. Gross nitrification was insensitive to all treatments, whereas potential nitrification was higher in the high N treatment and was further stimulated by elevated CO₂ in the high N treatment. Gross mineralization and NH<span class="Stack">₄⁺</span> consumption rates were also significantly increased in response to elevated CO₂ in the high N treatment, while potential denitrification showed a significant increase in response to N addition. The discrepancy between the responses of gross and potential nitrification to elevated CO₂ and inorganic N supply suggest that these measurements provide different information, and should be used as complementary approaches to understand nitrification response to global change.