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Linking big models to big data: efficient ecosystem model calibration through Bayesian model emulation

Data-model integration plays a critical role in assessing and improving our capacity to predict ecosystem dynamics. Similarly, the ability to attach quantitative statements of uncertainty around model forecasts is crucial for model assessment and interpretation and for setting field research priorities. Bayesian methods provide a rigorous data assimilation framework for […]

Novel measurements of a fine-scale albedo: Using a commercial quadcopter to measure radiation fluxes

Remote sensing of radiative indices must balance spatially and temporally coarse satellite measurements with finer-scale, but geographically limited, in-situ surface measurements. Instruments mounted upon an Unmanned Aerial Vehicle (UAV) can provide small-scale, mobile remote measurements that fill this resolution gap. Here we present and validate a novel method of obtaining […]

Nutrient limitation of plant productivity in scrubby flatwoods: Does fire shift nitrogen versus phosphorus limitation?

Differences in the biogeochemistry of nitrogen (N) and phosphorus (P) lead to differential losses and inputs during and over time after fire such that fire may affect nutrient limitation of primary productivity. We conducted a nutrient addition experiment in scrubby flatwoods, a Florida scrub community type, to test the hypothesis […]

Novel bacterial lineages associated with boreal moss species

Mosses are critical components of boreal ecosystems where they typically account for a large proportion of net primary productivity and harbour diverse bacterial communities that can be the major source of biologically-fixed nitrogen in these ecosystems. Despite their ecological importance, we have limited understanding of how microbial communities vary across […]

Water response of ecosystem respiration regulates future projection of net ecosystem productivity in a semiarid grassland

Recent evidences show that terrestrial biogeochemical models have large uncertainty in estimating climate-change effect on grassland net ecosystem productivity (NEP), which is defined as the difference between gross ecosystem photosynthesis (GEP) and respiration (ER). It remains unclear that whether GEP or ER limits the model capability to simulate NEP responses […]

A Dynamic Landsat Derived Normalized Difference Vegetation Index (NDVI) product for the conterminous United States

Satellite derived vegetation indices (VIs) are broadly used in ecological research, ecosystem modeling, and land surface monitoring. The Normalized Difference Vegetation Index (NDVI), perhaps the most utilized VI, has countless applications across ecology, forestry, agriculture, wildlife, biodiversity, and other disciplines. Calculating satellite derived NDVI is not always straight-forward, however, as […]

Colonizing opportunistic pathogens (COPs): The beasts in all of us

Colonizing opportunistic pathogens (COPs) are microbes that asymptomatically colonize the human body and, when the conditions are right, can cause infections. Their ability to persist indefinitely and to be transmitted without detection gives COPs a unique epidemiology that warrants special consideration. There are examples of COPs among bacteria, fungi (e.g., […]