Search Results for: ning d

We present a performance-optimized algorithm, subsampled open-reference OTU picking, for assigning marker gene (e.g., 16S rRNA) sequences generated on next-generation sequencing platforms to operational taxonomic units (OTUs) for microbial community analysis. This algorithm provides benefits over de novo OTU picking (clustering can be performed largely in parallel, reducing runtime) and […]

High-latitude ecosystems store approximately 1700 Pg of soil carbon (C), which is twice as much C as is currently contained in the atmosphere. Permafrost thaw and subsequent microbial decomposition of permafrost organic matter could add large amounts of C to the atmosphere, thereby influencing the global C cycle. The rates […]

Predicting tree biomass and growth increments via allometric equations is routine in forestry, but this approach is problematic in old-growth forests unless equations are derived from trees spanning the full size range. Using intensive measurements of 27 standing Eucalyptus regnans trees 61.1–99.8 m tall and 80–430 years old in Tasmania, Victoria, and […]

Many studies have assessed the responses of soil microbial functional groups to increases in atmospheric CO2 or N deposition alone and more rarely in combination. However, the effects of elevated CO2 and N on the (de)coupling between different microbial functional groups (e.g., different groups of nitrifiers) have been barely studied, […]

Unprecedented rates of climate warming over the past century have resulted in increased forest stress and mortality worldwide. Decreased tree growth in association with increasing temperatures is generally accepted as a signal of temperature-induced drought stress. However, variations in tree growth alone do not reveal the physiological mechanisms behind recent […]

Quantifying the impacts of changing climatic conditions on forest growth is integral to estimating future forest carbon balance. We used a growth-and-yield model, modified for climate sensitivity, to quantify the effects of altered climate on mixed-conifer forest growth in the Lake Tahoe Basin, California. Estimates of forest growth and live […]

Climate models predict that the southwestern United States will experience an increase in drought frequency and intensity with global climate change. We tested the hypothesis that leaf litter produced under natural drought conditions would have an altered litter chemistry profile and affect decomposition rates and macro invertebrate colonization compared to […]

Soil microbial communities are extremely complex, being composed of thousands of low-abundance species (<0.1% of total). How such complex communities respond to natural or human-induced fluctuations, including major perturbations such as global climate change, remains poorly understood, severely limiting our predictive ability for soil ecosystem functioning and resilience. In this […]

Forests are a significant part of the global carbon cycle and are increasingly viewed as tools for mitigating climate change. Natural disturbances, such as fire, can reduce carbon storage. However, many forests and dependent species evolved with frequent fire as an integral ecosystem process. We used a landscape forest simulation […]

Microbial necromass is an important source of stabilized organic matter in soil, yet the decomposition dynamics of necromass constituents have not been adequately characterized. This includes DNA, a nutrient-rich molecule that when released into the environment as extracellular DNA (eDNA) can be readily used by soil microorganisms. However, the ecological […]